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Analyse bioinformatique des séquences
BLAST
Fichier résultat (1)
BLASTN 1.4.7 [16-Oct-94] [Build 17:42:06 Mar 10 1995]
Reference: Altschul, Stephen F., Warren Gish, Webb Miller, Eugene W. Myers,
and David J. Lipman (1990). Basic local alignment search tool. J. Mol. Biol.
215:403-10.
Notice: this program and its default parameter settings are optimized to find
nearly identical sequences rapidly. To identify weak similarities encoded in
nucleic acid, use BLASTX, TBLASTN or TBLASTX.
Query= gb|X17217|ADAAVAR Avian adenovirus (CELO) DNA encoding VA
(virus-associated) RNA and six open reading frames.
(4898 letters)
Database: smallgenbank.fasta
100 sequences; 205,192 total letters.
Searching.................................................done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
gb AAUNKDNA 3576 Z17216 Avian adenovirus DNA (CEL06). ... 302 6.4e-17 1
gb AAVSPHERE 8457 M77182 Amsacta entomopoxvirus sphero... 112 0.0052 4
gb AAVSPHER 4657 M75889 Amsacta moorei entomopoxvirus ... 94 0.34 3
gb AAFVMAF 3171 M26769 Avian musculoaponeurotic fibros... 92 0.96 2
gb ACU10885 2773 U10885 AcMNPV HR3 p6.9 gene, partial ... 101 0.97 1
gb ACSJUN 1074 M16266 Avian sarcoma virus 17 proviral ... 98 0.998 1
gb AAVTHYKIN 1511 M80924 Amsacta entomopoxvirus thymid... 98 0.998 1
gb AAPARV 4176 X74945 Aedes albopictus Parvovirus DNA.... 92 0.998 2
gb AD12PROT 809 X07655 Human adenovirus type 12 endopr... 97 0.9992 1
gb ACU04879 3320 U04879 Autographa californica nuclear... 91 0.9994 2
gb ACU09501 1572 U09501 Autographa californica nuclear... 96 0.9999 1
gb A15H9HEX 1528 X76707 Adenovirus type 15H9 (Morrison... 88 0.99992 2
BLAST
Fichier résultat (2)
>gb AAUNKDNA 3576 Z17216 Avian adenovirus DNA (CEL06).
Length = 3576
Minus Strand HSPs:
Score = 302 (83.4 bits), Expect = 6.4e-17, P = 6.4e-17
Identities = 62/64 (96%), Positives = 62/64 (96%), Strand = Minus / Plus
Query: 64 AGCGACACGCTGCGGTTATGGCCGGTTATGACTGCGTTAGTTTTTGAGGTTATTATACAT 5
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3513 AGCGACACCGTGCGGTTATGGCCGGTTATGACTGCGTTAGTTTTTGAGGTTATTATACAT 3572
Query: 4 CATC 1
||||
Sbjct: 3573 CATC 3576
BLAST
Fichier résultat (3)
>gb AAVSPHERE 8457 M77182 Amsacta entomopoxvirus spheroidin gene, co
Length = 8457
Minus Strand HSPs:
Score = 112 (30.9 bits), Expect = 0.0052, Sum P(4) = 0.0052
Identities = 48/80 (60%), Positives = 48/80 (60%), Strand = Minus / Plus
Query: 1507 TCAAAGTGATTGTTCAAGGTATGTCATTATATACATATTTACAATATGCATTAATATCAC 1448
| ||| | || | || || | ||| || || ||||| | | | || | || |
Sbjct: 307 TAAAACTCATAGAATAATATAATTTTTTAAATTCAAATTTAGATTTTATGTTGAAATAAA 366
Query: 1447 CTATCTAATAGAGCATTAAT 1428
|||| ||||| | | || |
Sbjct: 367 CTATATAATATAAAAATATT 386
Score = 98 (27.1 bits), Expect = 0.0052, Sum P(4) = 0.0052
Identities = 58/106 (54%), Positives = 58/106 (54%), Strand = Minus / Plus
Query: 175 AGATTCGTATTCGTATTGGTTAGAAAACAAATAAATCAATAAACTAATTTATGATATCAT 116
| ||| | ||| || | || ||| || ||| ||| | |||| | ||
Sbjct: 7317 ATATTAATCTTCTCATAGTTTTTAAACCACCTAATTCAGTTTTATAATCATATTTTTCTG 7376
Query: 115 TCATATTTATGGGTGTGGTTTTATTATGCGTCATAAAACTATTTTG 70
|||||| | | | || | || | ||||| |||| ||
Sbjct: 7377 CCATATTATATAATTTAGATTGCTCATCTGACATAATTATATTATG 7422
Score = 94 (26.0 bits), Expect = 0.46, Sum P(3) = 0.37
Identities = 26/35 (74%), Positives = 26/35 (74%), Strand = Minus / Plus
Query: 4082 AAAAAAATAGAAAAATGAACTAACCGACAATAAGA 4048
|||| |||| ||||| | | || ||| |||| ||
Sbjct: 3104 AAAACAATAAGAAAATTATCAAATCGAAAATATGA 3138
Score = 93 (25.7 bits), Expect = 0.011, Sum P(4) = 0.011
Identities = 37/60 (61%), Positives = 37/60 (61%), Strand = Minus / Plus
Query: 156 TTAGAAAACAAATAAATCAATAAACTAATTTATGATATCATTCATATTTATGGGTGTGGT 97
||| || | | |||||| |||| | |||| | | | | ||| || | |||| |
Sbjct: 6120 TTACAAGTTATAAAAATCATTAAAATGATTTTTTAAAATGATATTATCGATAGTTGTGAT 6179
BLAST
Fichier résultat (4)
Parameters:
W=4
V=500
B=250
-ctxfactor=2.00
E=10
Query ----- As Used ----- ----- Computed ----
Strand MatID Matrix name Lambda K H Lambda K H
+1 0 +5,-4 0.192 0.226 0.357 same same same
-1 0 +5,-4 0.192 0.226 0.357 same same same
Query
Strand MatID Length Eff.Length E S W T X E2 S2
+1 0 4898 4898 10. 92 4 21 73 0.021 84
-1 0 4898 4898 10. 92 4 21 73 0.021 84
Statistics:
Query Expected Observed HSPs HSPs
Strand MatID High Score High Score Reportable Reported
+1 0 100 (27.6 bits) 98 (27.1 bits) 6 6
-1 0 100 (27.6 bits) 302 (83.4 bits) 23 23
Query Neighborhd Word Excluded Failed Successful Overlaps
Strand MatID Words Hits Hits Extensions Extensions Excluded
+1 0 4895 3999877 1124998 2874845 34 0
-1 0 4895 4163077 1183486 2979551 40 0
Database: smallgenbank.fasta
Release date: unknown
Posted date: 2:36 PM MET DST Oct 08, 1996
# of letters in database: 205,192
# of sequences in database: 100
# of database sequences satisfying E: 12
No. of states in DFA: 85 (6 KB)
Total size of DFA: 84 KB (128 KB)
Time to generate neighborhood: 0.06u 0.00s 0.06t Real: 00:00:00
Time to search database: 57.02u 0.05s 57.07t Real: 00:00:58
Total cpu time: 57.19u 0.39s 57.58t Real: 00:00:58
© Université
de TOURS - GÉNET
Document
modifié, le
14 décembre, 2006
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