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Analyse bioinformatique des séquences
FASTA
Fichier résultat (1)
seq, 97 aa vs smallswissprot.fasta library
one = represents 1 library sequences
z-opt E()
20 0 0:
22 0 0:
24 0 0:
26 0 0:
28 0 0:
30 0 0:
32 0 1:*
34 0 2: *
36 0 4: *
38 0 6: *
40 0 8: *
42 0 9: *
44 3 10:=== *
46 19 10:=========*=========
48 13 9:========*====
50 12 8:=======*====
52 9 7:======*==
54 7 6:=====*=
56 7 5:====*==
58 1 4:= *
60 1 3:= *
62 2 3:==*
64 6 2:=*====
66 4 2:=*==
68 0 1:*
70 2 1:*=
72 2 1:*=
74 0 1:*
76 10 0:==========
78 2 0:==
80 1 0:=
82 1 0:=
84 0 0:
FASTA
Fichier résultat (2)
35111 residues in 105 sequences
statistics extrapolated from 105 to 104 sequences
results sorted and z-values calculated from opt score
104 scores better than 1 saved, ktup: 2, variable pamfact
BLOSUM50 matrix, gap penalties: -12,-2
joining threshold: 36, optimization threshold: 24, width: 16
scan time: 0:00:00
The best scores are: initn init1 opt z-sc E(104)
sp|P32234|128U_DROME GTP-BINDING PROTEIN 128UP. 72 72 85 123.8 0.0045
sp|P16210|1A02_PANTR CHLA CLASS I HISTOCOMPATIBIL 42 42 62 92.6 0.25
sp|P15921|190K_RICRI 190 KD ANTIGEN PRECURSOR (CE 50 50 65 83.4 0.81
sp|P05534|1A24_HUMAN HLA CLASS I HISTOCOMPATIBILI 35 35 51 79.9 1.2
sp|P46733|19KD_MYCAV 19 KD LIPOPROTEIN ANTIGEN PR 44 44 77 79.4 1.3
sp|P13749|1A04_PANTR CHLA CLASS I HISTOCOMPATIBIL 34 34 50 78.7 1.5
sp|P30377|1A03_GORGO CLASS I HISTOCOMPATIBILITY A 34 34 49 77.5 1.7
sp|P30375|1A01_GORGO CLASS I HISTOCOMPATIBILITY A 34 34 49 77.5 1.7
sp|P30376|1A02_GORGO CLASS I HISTOCOMPATIBILITY A 34 34 49 77.5 1.7
sp|P01892|1A02_HUMAN HLA CLASS I HISTOCOMPATIBILI 34 34 49 77.5 1.7
sp|P30378|1A04_GORGO CLASS I HISTOCOMPATIBILITY A 34 34 49 77.5 1.7
sp|P13744|11SB_CUCMA 11S GLOBULIN BETA SUBUNIT PR 45 45 46 76.4 2
sp|P18462|1A25_HUMAN HLA CLASS I HISTOCOMPATIBILI 34 34 48 76.2 2
sp|P30450|1A26_HUMAN HLA CLASS I HISTOCOMPATIBILI 34 34 48 76.2 2
sp|P16209|1A01_PANTR CHLA CLASS I HISTOCOMPATIBIL 34 34 48 76.2 2
sp|P13748|1A03_PANTR CHLA CLASS I HISTOCOMPATIBIL 34 34 48 76.2 2
sp|Q00740|1A1D_PSESP 1-AMINOCYCLOPROPANE-1-CARBOX 33 33 49 73.4 2.9
sp|Q07262|1A1C_TOBAC 1-AMINOCYCLOPROPANE-1-CARBOX 33 33 44 72.8 3.1
sp|P15711|104K_THEPA 104 KD MICRONEME-RHOPTRY ANT 42 42 48 69.7 4.6
sp|P23599|1A11_CUCMA 1-AMINOCYCLOPROPANE-1-CARBOX 31 31 42 69.6 4.6
FASTA
Fichier résultat (3)
sp|P15921|190K_RICRI 190 KD ANTIGEN PRECURSOR (CELL SU (2249 aa)
initn: 50 init1: 50 opt: 65 z-score: 83.4 E(): 0.81
Smith-Waterman score: 70; 28.0% identity in 93 aa overlap
10 20
sp|P15 MTILASICKLGNT--KSTSSSIGSSYSSAV
... :. ::.. :.:...: .. :::
sp|P305 TGGDNVGVLNLNGALSQVTGDIGNTNSLATISVGAGTATLGGAVIKATTTKI-TNAVSAV
640 650 660 670 680 690
30 40 50 60 70 80
sp|P15 SFGSNSVSCGECGGDGPSFPNASPRTGVKAGVNVDGLLGAIGKTVNGMLISPNGGGGGMG
.: . : : . : ::. .:. . ^. . . : ::.: . :^. : :.:
sp|P30 KFTNPVVVTGAIDSTG----NAN--NGIVTFTGNSTVTGDIGNT--NALATVNVGAGTAT
700 710 720 730 740
© Université de TOURS - GÉNET
Document
modifié, le
14 décembre, 2006
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