Liste de publications permettant d'avoir un aperçu sur les méthodes
statistiques utilisées en analyse de données issues du transcriptome
Hennequet-Antier
C , Chiapello
H , Piot
K , Degrelle
S , Hue
I , Renard
JP , Rodolphe
F , Robin
S.
AnovArray: a set of SAS macros for the analysis of variance of gene expression
data. BMC
Bioinformatics. 2005 Jun 16;6:150.
JJ , Delongchamp
RR , Tsai
CA , Hsueh HM , Sistare
F , Thompson
KL , Desai
VG , Fuscoe
JC.
Analysis of variance components in gene expression data.
Bioinformatics. 2004
Jun 12;20(9):1436-46. Epub 2004 Feb 12.
Kerr
MK , Martin
M , Churchill
GA.
Analysis of variance for gene expression microarray data.
J Comput
Biol. 2000;7(6):819-37.
Vingron
M.
Bioinformatics needs to adopt statistical thinking.
Bioinformatics. 2001
May;17(5):389-90.
Park
T , Yi
SG , Lee
S , Lee
SY , Yoo
DH , Ahn
JI , Lee
YS.
Statistical tests for identifying differentially expressed genes in time-course
microarray experiments.
Bioinformatics. 2003
Apr 12;19(6):694-703.
Kutalik
Z , Inwald
J , Gordon
SV , Hewinson
RG , Butcher
P , Hinds
J , Cho
KH , Wolkenhauer
O. Advanced significance analysis of microarray data based on weighted resampling:
a comparative study and application to gene deletions in Mycobacterium bovis.
Bioinformatics. 2004
Feb 12;20(3):357-63.
Schäfer
J , Strimmer
K. An empirical Bayes approach to inferring large-scale gene association networks.
Bioinformatics. 2005
Mar;21(6):754-64. Epub 2004 Oct 12.
Hwang
D , Schmitt
WA , Stephanopoulos
G , Stephanopoulos
G .
Determination of minimum sample size and discriminatory expression patterns
in microarray data.
Bioinformatics. 2002
Sep;18(9):1184-93.
Sekowska
A , Robin
S , Daudin
JJ , Hénaut
A , Danchin
A . Extracting biological information from DNA arrays: an
unexpected link between arginine and methionine metabolism in Bacillus subtilis.
Genome Biol. 2001;2(6):RESEARCH0019.
Epub 2001 Jun 1.
Tusher
VG , Tibshirani
R , Chu
G .
Significance analysis of microarrays applied to the ionizing radiation response.
Proc Natl Acad Sci U S A. 2001 Apr 24;98(9):5116-21. Epub 2001 Apr 17.
Sásik
R , Calvo
E , Corbeil
J . Statistical analysis of high-density oligonucleotide arrays: a multiplicative
noise model.
Bioinformatics. 2002
Dec;18(12):1633-40.
Kerr
MK , Churchill
GA .
Statistical design and the analysis of gene expression microarray data. Genet
Res. 2001 Apr;77(2):123-8.
Neuhäuser
M , Senske
R .
The Baumgartner-Weiss-Schindler test for the detection of differentially expressed
genes in replicated microarray experiments.
Bioinformatics. 2004
Dec 12;20(18):3553-64. Epub 2004 Jul 29.
Carpentier
AS , Riva
A , Tisseur
P , Didier
G , Hénaut
A .
The operons, a criterion to compare the reliability of transcriptome analysis
tools: ICA is more reliable than ANOVA, PLS and PCA.
Comput Biol
Chem. 2004 Feb;28(1):3-10.
Chiappetta
P , Roubaud
MC , Torrésani
B.
Blind source separation and the analysis of microarray data. J
Comput Biol. 2004;11(6):1090-109.
